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243rd ACS
Mar 25-29, 2012
San Diego, CA
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Presentation at the:  SABPA Science & Technology Forum:

Advances in Structure-based Drug Design

March 17, 2007, San Diego, CA, USA.



Fragment based flexible ligand docking and screening with eHiTS

Darryl Reid, MSc, SimBioSys, Inc.

Abstract:

The challenge of rational drug discovery often involves combining several different computational methods to help generate and analyze enough information about your system of interest. eHiTS Filter is a ligand based screening tool that uses a surface property based pseudo-pharmacophore to determine molecular similarity. This method has been shown to enrich data sets with molecules that are more likely to bind to target receptors. Used as a pre-screening tool for docking, eHiTS Filter can dramatically reduce the computational time need to screen a full database, while still giving you the docked poses of the most interesting structures. eHiTS is a systematic and exhaustive fragment based docking program that generates very good binding poses for potential ligands. The CheVi visualization package shows the interactions between ligands and receptors in a very unique way which assists in better understanding of the binding at the active site.

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